IL_5WYJ_042

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

AAUC*GAU

Length

7 nucleotides

Bulged bases

5WYJ|1|SA|A|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_042 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.2236

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5WYJ|1|SA|A|265
5WYJ|1|SA|A|266
5WYJ|1|SA|U|267
5WYJ|1|SA|C|268
*
5WYJ|1|SA|G|287
5WYJ|1|SA|A|288
5WYJ|1|SA|U|289

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SH

40S ribosomal protein S6-A