IL_5WYJ_044

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

5WYJ|1|SA|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_044 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.3849

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5WYJ|1|SA|G|274
5WYJ|1|SA|C|275
5WYJ|1|SA|C|276
*
5WYJ|1|SA|G|279
5WYJ|1|SA|U|280
5WYJ|1|SA|G|281
5WYJ|1|SA|C|282

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SH

40S ribosomal protein S6-A