IL_5WYJ_046

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5WYJ|1|SA|U|320, 5WYJ|1|SA|C|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_046 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3759

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5WYJ|1|SA|U|318
5WYJ|1|SA|U|319
5WYJ|1|SA|U|320
5WYJ|1|SA|C|321
5WYJ|1|SA|G|322
5WYJ|1|SA|A|323
*
5WYJ|1|SA|U|345
5WYJ|1|SA|G|346

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E4

Enp2

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A