IL_5WYJ_062

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UUG*UUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_062 not in the Motif Atlas

Homologous match to IL_4V88_433

Geometric discrepancy: 0.2926

The information below is about IL_4V88_433

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5WYJ|1|SA|U|893
5WYJ|1|SA|U|894
5WYJ|1|SA|G|895
*
5WYJ|1|SA|U|917
5WYJ|1|SA|U|918
5WYJ|1|SA|A|919

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S1-A

Chain SP

40S ribosomal protein S14-A