IL_5WYJ_073

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5WYJ|1|SA|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_073 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.1828

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5WYJ|1|SA|G|1268
5WYJ|1|SA|U|1269
5WYJ|1|SA|G|1270
*
5WYJ|1|SA|C|1440
5WYJ|1|SA|C|1441

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E1

Ribosomal RNA small subunit methyltransferase NEP1

Chain E3

Essential nuclear protein 1