IL_5WYJ_074

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

5WYJ|1|SA|C|1274

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_074 not in the Motif Atlas

Geometric match to IL_4V9F_036

Geometric discrepancy: 0.3736

The information below is about IL_4V9F_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02203.1

Basepair signature

cWW-cSW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WYJ|1|SA|G|1271
5WYJ|1|SA|U|1272
5WYJ|1|SA|G|1273
5WYJ|1|SA|C|1274
5WYJ|1|SA|A|1275
5WYJ|1|SA|U|1276
*
5WYJ|1|SA|A|1436
5WYJ|1|SA|U|1437
5WYJ|1|SA|G|1438
5WYJ|1|SA|C|1439

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E1

Ribosomal RNA small subunit methyltransferase NEP1

Chain E3

Essential nuclear protein 1