IL_5WYJ_081

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_081 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.22

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5WYJ|1|SA|U|1650
5WYJ|1|SA|A|1651
5WYJ|1|SA|C|1652
*
5WYJ|1|SA|G|1748
5WYJ|1|SA|A|1749
5WYJ|1|SA|A|1750

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain BB

U3 small nucleolar RNA-associated protein 12