IL_5WYK_011

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAGA*UAUAC

Length

10 nucleotides

Bulged bases

5WYK|1|5A|A|141, 5WYK|1|5A|U|142

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|5A|G|100
5WYK|1|5A|G|101
5WYK|1|5A|A|102
5WYK|1|5A|G|103
5WYK|1|5A|A|104
*
5WYK|1|5A|U|140
5WYK|1|5A|A|141
5WYK|1|5A|U|142
5WYK|1|5A|A|143
5WYK|1|5A|C|144

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AB

Utp5

Chain AF

Utp15