IL_5WYK_014

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAUGC*GUUUA

Length

11 nucleotides

Bulged bases

5WYK|1|5A|U|170, 5WYK|1|5A|U|225, 5WYK|1|5A|U|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|5A|U|167
5WYK|1|5A|G|168
5WYK|1|5A|A|169
5WYK|1|5A|U|170
5WYK|1|5A|G|171
5WYK|1|5A|C|172
*
5WYK|1|5A|G|224
5WYK|1|5A|U|225
5WYK|1|5A|U|226
5WYK|1|5A|U|227
5WYK|1|5A|A|228

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain 3H

13 kDa ribonucleoprotein-associated protein

Chain AA

Utp4