IL_5WYK_019

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGAAUG*UAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|5A|G|336
5WYK|1|5A|G|337
5WYK|1|5A|A|338
5WYK|1|5A|A|339
5WYK|1|5A|U|340
5WYK|1|5A|G|341
*
5WYK|1|5A|U|384
5WYK|1|5A|A|385
5WYK|1|5A|A|386
5WYK|1|5A|C|387

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain MA

U3 small nucleolar ribonucleoprotein protein IMP3

Chain U1

Utp7

Chain UC

Unassigned helices