IL_5WYK_020

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5WYK|1|5A|U|382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_020 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.2402

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5WYK|1|5A|C|342
5WYK|1|5A|C|343
*
5WYK|1|5A|G|381
5WYK|1|5A|U|382
5WYK|1|5A|G|383

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U1

Utp7

Chain UC

Unassigned helices