IL_5WYK_023

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_023 not in the Motif Atlas

Geometric match to IL_3IVK_002

Geometric discrepancy: 0.2385

The information below is about IL_3IVK_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5WYK|1|5A|C|395
5WYK|1|5A|A|396
5WYK|1|5A|A|397
*
5WYK|1|5A|U|460
5WYK|1|5A|A|461
5WYK|1|5A|G|462

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain MA

U3 small nucleolar ribonucleoprotein protein IMP3