IL_5WYK_024

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAGCGAU*GGAACCUG

Length

15 nucleotides

Bulged bases

5WYK|1|5A|G|404, 5WYK|1|5A|C|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|5A|C|400
5WYK|1|5A|A|401
5WYK|1|5A|G|402
5WYK|1|5A|C|403
5WYK|1|5A|G|404
5WYK|1|5A|A|405
5WYK|1|5A|U|406
*
5WYK|1|5A|G|450
5WYK|1|5A|G|451
5WYK|1|5A|A|452
5WYK|1|5A|A|453
5WYK|1|5A|C|454
5WYK|1|5A|C|455
5WYK|1|5A|U|456
5WYK|1|5A|G|457

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain SA

Small subunit ribosomal RNA; SSU rRNA

Chain UC

Unassigned helices