IL_5WYK_029
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CAG*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WYK_029 not in the Motif Atlas
- Geometric match to IL_4V88_419
- Geometric discrepancy: 0.1828
- The information below is about IL_4V88_419
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5WYK|1|5A|C|550
5WYK|1|5A|A|551
5WYK|1|5A|G|552
*
5WYK|1|5A|C|585
5WYK|1|5A|A|586
5WYK|1|5A|G|587
Current chains
- Chain 5A
- 5ETS RNA
Nearby chains
- Chain UA
- Helical domain protein
Coloring options: