IL_5WYK_029

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_029 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.1828

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5WYK|1|5A|C|550
5WYK|1|5A|A|551
5WYK|1|5A|G|552
*
5WYK|1|5A|C|585
5WYK|1|5A|A|586
5WYK|1|5A|G|587

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain UA

Helical domain protein