IL_5WYK_046

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

5WYK|1|SA|U|320, 5WYK|1|SA|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_046 not in the Motif Atlas

Homologous match to IL_8P9A_392

Geometric discrepancy: 0.3685

The information below is about IL_8P9A_392

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5WYK|1|SA|U|318
5WYK|1|SA|U|319
5WYK|1|SA|U|320
5WYK|1|SA|C|321
5WYK|1|SA|G|322
5WYK|1|SA|A|323
*
5WYK|1|SA|U|345
5WYK|1|SA|G|346

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E4

Enp2

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A