IL_5WYK_048

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_048 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.2745

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5WYK|1|SA|G|389
5WYK|1|SA|G|390
5WYK|1|SA|A|391
*
5WYK|1|SA|U|406
5WYK|1|SA|A|407
5WYK|1|SA|C|408

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain E4

Enp2

Chain SJ

40S ribosomal protein S8-A