IL_5WYK_051

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

5WYK|1|SA|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|SA|G|480
5WYK|1|SA|A|481
5WYK|1|SA|U|482
5WYK|1|SA|A|483
5WYK|1|SA|C|484
5WYK|1|SA|A|485
*
5WYK|1|SA|U|502
5WYK|1|SA|G|503
5WYK|1|SA|U|504
5WYK|1|SA|A|505
5WYK|1|SA|A|506
5WYK|1|SA|U|507
5WYK|1|SA|U|508

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SK

40S ribosomal protein S9-A

Chain Sf

40S ribosomal protein S30-A

Chain UC

Unassigned helices