IL_5WYK_053

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5WYK|1|SA|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_053 not in the Motif Atlas

Homologous match to IL_9H3G_186

Geometric discrepancy: 0.5082

The information below is about IL_9H3G_186

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

5WYK|1|SA|G|557
5WYK|1|SA|U|558
5WYK|1|SA|C|559
*
5WYK|1|SA|G|586
5WYK|1|SA|C|587

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain Sf

40S ribosomal protein S30-A

Chain UC

Unassigned helices