IL_5WYK_060
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 5WYK|1|SA|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WYK_060 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2166
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5WYK|1|SA|U|893
5WYK|1|SA|U|894
5WYK|1|SA|G|895
5WYK|1|SA|U|896
5WYK|1|SA|C|897
5WYK|1|SA|A|898
5WYK|1|SA|G|899
*
5WYK|1|SA|C|910
5WYK|1|SA|U|911
5WYK|1|SA|U|912
5WYK|1|SA|G|913
5WYK|1|SA|G|914
5WYK|1|SA|A|915
5WYK|1|SA|U|916
5WYK|1|SA|U|917
5WYK|1|SA|U|918
5WYK|1|SA|A|919
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain BC
- U3 small nucleolar RNA-associated protein 13
- Chain SC
- 40S ribosomal protein S1-A
- Chain SP
- 40S ribosomal protein S14-A
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