IL_5WYK_066

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CACUG*CGUGCAACGAG

Length

16 nucleotides

Bulged bases

5WYK|1|SA|A|1471, 5WYK|1|SA|U|1473, 5WYK|1|SA|G|1534

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|SA|C|1470
5WYK|1|SA|A|1471
5WYK|1|SA|C|1472
5WYK|1|SA|U|1473
5WYK|1|SA|G|1474
*
5WYK|1|SA|C|1533
5WYK|1|SA|G|1534
5WYK|1|SA|U|1535
5WYK|1|SA|G|1536
5WYK|1|SA|C|1537
5WYK|1|SA|A|1569
5WYK|1|SA|A|1570
5WYK|1|SA|C|1571
5WYK|1|SA|G|1572
5WYK|1|SA|A|1573
5WYK|1|SA|G|1574

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain AF

Utp15

Chain E2

Ribosomal RNA small subunit methyltransferase NEP1

Chain SG

40S ribosomal protein S5