IL_5WYK_078

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GACU*ACUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYK|1|3A|G|47
5WYK|1|3A|A|48
5WYK|1|3A|C|49
5WYK|1|3A|U|50
*
5WYK|1|5A|A|468
5WYK|1|5A|C|469
5WYK|1|5A|U|470
5WYK|1|5A|C|471

Current chains

Chain 3A

U3 RNA

Chain 5A

5ETS RNA

Nearby chains

Chain AE

U3 small nucleolar RNA-associated protein 10

Chain U1

Utp7