IL_5WYK_081

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGU*AUUG

Length

7 nucleotides

Bulged bases

5WYK|1|5A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_081 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.2332

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

5WYK|1|5A|C|245
5WYK|1|5A|G|246
5WYK|1|5A|U|247
*
5WYK|1|5A|A|265
5WYK|1|5A|U|266
5WYK|1|5A|U|267
5WYK|1|5A|G|268

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain SR

40S ribosomal protein S16-A

Chain UC

Unassigned helices