IL_5WYK_086
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUACA*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WYK_086 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.3854
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5WYK|1|SA|G|516
5WYK|1|SA|U|517
5WYK|1|SA|A|518
5WYK|1|SA|C|519
5WYK|1|SA|A|520
*
5WYK|1|SA|U|532
5WYK|1|SA|U|533
5WYK|1|SA|A|534
5WYK|1|SA|A|535
5WYK|1|SA|C|536
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain B1
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SZ
- 40S ribosomal protein S24-A
Coloring options: