IL_5WYK_089

3D structure

PDB id

5WYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUCG*UC

Length

6 nucleotides

Bulged bases

5WYK|1|5A|U|108, 5WYK|1|5A|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYK_089 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.3173

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5WYK|1|5A|G|107
5WYK|1|5A|U|108
5WYK|1|5A|C|109
5WYK|1|5A|G|110
*
5WYK|1|5A|U|136
5WYK|1|5A|C|137

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AF

Utp15

Chain UB

Helical domain protein