IL_5WYK_092
3D structure
- PDB id
- 5WYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AUUU*AACU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WYK_092 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2646
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
5WYK|1|SA|A|206
5WYK|1|SA|U|207
5WYK|1|SA|U|208
5WYK|1|SA|U|209
*
5WYK|1|SA|A|256
5WYK|1|SA|A|257
5WYK|1|SA|C|258
5WYK|1|SA|U|259
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S8-A
- Chain SM
- 40S ribosomal protein S11-A
Coloring options: