IL_5XBL_002

3D structure

PDB id

5XBL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of nuclease in complex with associated protein

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGC*GUCC

Length

7 nucleotides

Bulged bases

5XBL|1|B|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XBL_002 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2614

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

5XBL|1|B|G|53
5XBL|1|B|G|54
5XBL|1|B|C|55
*
5XBL|1|B|G|58
5XBL|1|B|U|59
5XBL|1|B|C|60
5XBL|1|B|C|61

Current chains

Chain B

RNA (98-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1