IL_5XYM_008

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

5XYM|1|A|G|594, 5XYM|1|A|A|598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_008 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1472

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

5XYM|1|A|G|572
5XYM|1|A|U|573
5XYM|1|A|A|574
5XYM|1|A|C|575
*
5XYM|1|A|G|586
5XYM|1|A|A|587
5XYM|1|A|G|588
5XYM|1|A|U|589
5XYM|1|A|G|590
5XYM|1|A|A|591
5XYM|1|A|A|592
5XYM|1|A|A|593
5XYM|1|A|G|594
5XYM|1|A|A|595
5XYM|1|A|G|596
5XYM|1|A|U|597
5XYM|1|A|A|598
5XYM|1|A|C|599

Current chains

Chain A

23S RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24