IL_5XYM_021

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

5XYM|1|A|G|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_021 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.3762

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5XYM|1|A|U|962
5XYM|1|A|G|963
5XYM|1|A|U|964
*
5XYM|1|A|A|1051
5XYM|1|A|G|1052
5XYM|1|A|A|1053
5XYM|1|A|G|1054

Current chains

Chain A

23S RNA

Nearby chains

Chain Z

50S ribosomal protein L30