IL_5XYM_023
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_023 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.1104
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5XYM|1|A|G|974
5XYM|1|A|A|975
5XYM|1|A|G|976
5XYM|1|A|G|977
5XYM|1|A|U|978
5XYM|1|A|A|979
5XYM|1|A|G|980
*
5XYM|1|A|C|1033
5XYM|1|A|G|1034
5XYM|1|A|A|1035
5XYM|1|A|A|1036
5XYM|1|A|U|1037
5XYM|1|A|G|1038
5XYM|1|A|C|1039
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
Coloring options: