IL_5XYM_033
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GGAAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5XYM|1|A|U|1248, 5XYM|1|A|U|1251
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5XYM_033 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1063
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5XYM|1|A|G|1145
5XYM|1|A|G|1146
5XYM|1|A|A|1147
5XYM|1|A|A|1148
5XYM|1|A|A|1149
5XYM|1|A|A|1150
5XYM|1|A|G|1151
*
5XYM|1|A|C|1245
5XYM|1|A|G|1246
5XYM|1|A|A|1247
5XYM|1|A|U|1248
5XYM|1|A|A|1249
5XYM|1|A|A|1250
5XYM|1|A|U|1251
5XYM|1|A|G|1252
5XYM|1|A|U|1253
5XYM|1|A|A|1254
5XYM|1|A|G|1255
5XYM|1|A|C|1256
5XYM|1|A|G|1257
5XYM|1|A|G|1258
5XYM|1|A|G|1259
5XYM|1|A|G|1260
5XYM|1|A|C|1261
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
- Chain a
- Uncharacterized protein bL37
Coloring options: