IL_5XYM_036

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5XYM|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_036 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1284

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5XYM|1|A|C|1325
5XYM|1|A|G|1326
5XYM|1|A|G|1327
5XYM|1|A|U|1328
5XYM|1|A|G|1329
5XYM|1|A|A|1330
5XYM|1|A|A|1331
5XYM|1|A|G|1332
*
5XYM|1|A|U|1352
5XYM|1|A|G|1353
5XYM|1|A|G|1354
5XYM|1|A|A|1355
5XYM|1|A|G|1356

Current chains

Chain A

23S RNA

Nearby chains

Chain Q

50S ribosomal protein L20