IL_5XYM_040

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCCAG*CGC

Length

8 nucleotides

Bulged bases

5XYM|1|A|G|1450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_040 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2219

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5XYM|1|A|G|1437
5XYM|1|A|C|1438
5XYM|1|A|C|1439
5XYM|1|A|A|1440
5XYM|1|A|G|1441
*
5XYM|1|A|C|1449
5XYM|1|A|G|1450
5XYM|1|A|C|1451

Current chains

Chain A

23S RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23