IL_5XYM_043

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_043 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2514

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|C|1641
5XYM|1|A|G|1642
5XYM|1|A|A|1643
5XYM|1|A|U|1644
5XYM|1|A|G|1645
*
5XYM|1|A|C|1800
5XYM|1|A|U|1801
5XYM|1|A|A|1802
5XYM|1|A|G|1803

Current chains

Chain A

23S RNA

Nearby chains