IL_5XYM_045

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAG*UGAUC

Length

9 nucleotides

Bulged bases

5XYM|1|A|U|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_045 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.163

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5XYM|1|A|G|1661
5XYM|1|A|U|1662
5XYM|1|A|A|1663
5XYM|1|A|G|1664
*
5XYM|1|A|U|1774
5XYM|1|A|G|1775
5XYM|1|A|A|1776
5XYM|1|A|U|1777
5XYM|1|A|C|1778

Current chains

Chain A

23S RNA

Nearby chains