IL_5XYM_046

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

5XYM|1|A|U|1748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_046 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.121

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5XYM|1|A|U|1692
5XYM|1|A|A|1693
5XYM|1|A|A|1694
5XYM|1|A|G|1695
*
5XYM|1|A|U|1745
5XYM|1|A|G|1746
5XYM|1|A|A|1747
5XYM|1|A|U|1748
5XYM|1|A|G|1749

Current chains

Chain A

23S RNA

Nearby chains