IL_5XYM_063

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_063 not in the Motif Atlas

Geometric match to IL_5LR4_002

Geometric discrepancy: 0.319

The information below is about IL_5LR4_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|A|2076
5XYM|1|A|G|2077
5XYM|1|A|G|2078
5XYM|1|A|A|2079
5XYM|1|A|C|2080
5XYM|1|A|C|2081
*
5XYM|1|A|G|2108
5XYM|1|A|A|2109
5XYM|1|A|G|2110
5XYM|1|A|A|2111
5XYM|1|A|A|2112
5XYM|1|A|U|2113

Current chains

Chain A

23S RNA

Nearby chains