Motif IL_29495.1 Version IL_29495.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_018 | 7A0S | 0.6966 | 0 | Triple sheared with non-canonical cWW | X | LSU rRNA | G | 736 | C | 737 | G | 738 | G | 739 | A | 740 | G | 741 | * | U | 716 | G | 717 | A | 718 | A | 719 | A | 720 | C | 721 | cWW | ncWW | tSH | ntSH | ntHS | cWW |
| 2 | IL_3FTE_001 | 3FTE | 0.1692 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntHS | tHS | cWW | |
| 3 | IL_3FTF_001 | 3FTF | 0.0000 | 0 | Quadruple sheared | C+D | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | tHS | cWW |
| 4 | IL_3R9W_001 | 3R9W | 0.2183 | 0 | Quadruple sheared | B | RNA301 | G | 1515||||2_455 | G | 1516||||2_455 | G | 1517||||2_455 | A | 1518||||2_455 | A | 1519||||2_455 | C | 1520||||2_455 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | ntHS | tHS | cWW |
| 5 | IL_5LR3_002 | 5LR3 | 0.3781 | 0 | Quadruple sheared | A+B | RNA (10-mer) | C | 3 | G | 4 | G | 5 | A | 6 | U | 7 | G | 8 | * | C | 3 | G | 4 | G | 5 | A | 6 | U | 7 | G | 8 | cWW | tSH | tSH | tHS | tHS | cWW |
| 6 | IL_5LR4_002 | 5LR4 | 0.3746 | 0 | B+A | RNA (10-mer) | C | 3 | G | 4 | G | 5 | 6MZ | 6 | U | 7 | G | 8 | * | C | 3 | G | 4 | G | 5 | 6MZ | 6 | U | 7 | G | 8 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAAC*GGGAAC | 3 |
| GCGGAG*UGAAAC | 1 |
| CGGAUG*CGGAUG | 1 |
| CGG(6MZ)UG*CGG(6MZ)UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GGAA | 3 |
| CGGA*GAAA | 1 |
| GGAU*GGAU | 1 |
| GG(6MZ)U*GG(6MZ)U | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Quadruple sheared (4)
- (1)
- Triple sheared with non-canonical cWW (1)
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.17 | Avg 0.39 | Max 0.80
Coloring options: