IL_5XYM_069

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAA*UGGG

Length

7 nucleotides

Bulged bases

5XYM|1|A|G|2465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_069 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1502

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5XYM|1|A|C|2307
5XYM|1|A|A|2308
5XYM|1|A|A|2309
*
5XYM|1|A|U|2463
5XYM|1|A|G|2464
5XYM|1|A|G|2465
5XYM|1|A|G|2466

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28