IL_5XYM_071

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_071 not in the Motif Atlas

Geometric match to IL_3FOZ_001

Geometric discrepancy: 0.1675

The information below is about IL_3FOZ_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

5XYM|1|A|G|2320
5XYM|1|A|U|2321
5XYM|1|A|G|2322
*
5XYM|1|A|C|2419
5XYM|1|A|C|2420
5XYM|1|A|U|2421

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9