IL_5XYM_086

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

5XYM|1|A|C|3007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_086 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.138

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5XYM|1|A|U|2863
5XYM|1|A|U|2864
5XYM|1|A|G|2865
5XYM|1|A|A|2866
5XYM|1|A|G|2867
*
5XYM|1|A|C|3001
5XYM|1|A|A|3002
5XYM|1|A|A|3003
5XYM|1|A|G|3004
5XYM|1|A|A|3005
5XYM|1|A|C|3006
5XYM|1|A|C|3007
5XYM|1|A|A|3008
5XYM|1|A|G|3009

Current chains

Chain A

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13