IL_5XYM_087

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_087 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1094

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|C|2879
5XYM|1|A|U|2880
5XYM|1|A|A|2881
5XYM|1|A|G|2882
5XYM|1|A|U|2883
5XYM|1|A|A|2884
5XYM|1|A|C|2885
*
5XYM|1|A|G|2890
5XYM|1|A|G|2891
5XYM|1|A|A|2892
5XYM|1|A|C|2893
5XYM|1|A|C|2894
5XYM|1|A|G|2895

Current chains

Chain A

23S RNA

Nearby chains

Chain G

50S ribosomal protein L6