IL_5XYM_089

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UAUAC*GAUAG

Length

10 nucleotides

Bulged bases

5XYM|1|A|U|2916, 5XYM|1|A|A|2917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_089 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2224

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|U|2914
5XYM|1|A|A|2915
5XYM|1|A|U|2916
5XYM|1|A|A|2917
5XYM|1|A|C|2918
*
5XYM|1|A|G|2945
5XYM|1|A|A|2946
5XYM|1|A|U|2947
5XYM|1|A|A|2948
5XYM|1|A|G|2949

Current chains

Chain A

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19