IL_5XYM_095

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGGAAG*UGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_095 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1696

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

5XYM|1|A|U|3071
5XYM|1|A|G|3072
5XYM|1|A|G|3073
5XYM|1|A|A|3074
5XYM|1|A|A|3075
5XYM|1|A|G|3076
*
5XYM|1|A|U|3089
5XYM|1|A|G|3090
5XYM|1|A|C|3091
5XYM|1|A|A|3092
5XYM|1|A|G|3093

Current chains

Chain A

23S RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19