IL_5XYM_102

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCC*GAGU

Length

7 nucleotides

Bulged bases

5XYM|1|A|A|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_102 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.2753

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5XYM|1|A|G|1335
5XYM|1|A|C|1336
5XYM|1|A|C|1337
*
5XYM|1|A|G|1346
5XYM|1|A|A|1347
5XYM|1|A|G|1348
5XYM|1|A|U|1349

Current chains

Chain A

23S RNA

Nearby chains

Chain Q

50S ribosomal protein L20