IL_5XYM_107

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

5XYM|1|A|U|1935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYM_107 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2658

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5XYM|1|A|C|1933
5XYM|1|A|A|1934
5XYM|1|A|U|1935
5XYM|1|A|G|1936
5XYM|1|A|G|1937
*
5XYM|1|A|U|1963
5XYM|1|A|G|1964
5XYM|1|A|A|1965
5XYM|1|A|G|1966

Current chains

Chain A

23S RNA

Nearby chains