IL_5XYU_029

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

5XYU|1|A|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_029 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1373

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5XYU|1|A|C|642
5XYU|1|A|A|643
5XYU|1|A|G|644
5XYU|1|A|G|645
5XYU|1|A|G|646
*
5XYU|1|A|U|720
5XYU|1|A|G|721
5XYU|1|A|G|722
5XYU|1|A|G|723

Current chains

Chain A

16S RNA

Nearby chains

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18 2