IL_5XYU_037

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5XYU|1|A|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1942

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5XYU|1|A|G|915
5XYU|1|A|C|916
5XYU|1|A|A|917
*
5XYU|1|A|U|1363
5XYU|1|A|U|1364
5XYU|1|A|C|1365
5XYU|1|A|C|1366
5XYU|1|A|C|1367

Current chains

Chain A

16S RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9