IL_5XYU_043

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UG*UGUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_043 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.168

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5XYU|1|A|U|1053
5XYU|1|A|G|1054
*
5XYU|1|A|U|1063
5XYU|1|A|G|1064
5XYU|1|A|U|1065
5XYU|1|A|A|1081
5XYU|1|A|A|1082

Current chains

Chain A

16S RNA

Nearby chains

Chain E

30S ribosomal protein S5