IL_5XYU_049

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_049 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5XYU|1|A|G|1384
5XYU|1|A|C|1385
5XYU|1|A|C|1386
5XYU|1|A|C|1387
*
5XYU|1|A|G|1481
5XYU|1|A|U|1482
5XYU|1|A|A|1483
5XYU|1|A|A|1484
5XYU|1|A|C|1485

Current chains

Chain A

16S RNA

Nearby chains

Chain U

Conserved domain protein