IL_5XYU_053

3D structure

PDB id

5XYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of Mycobacterium smegmatis ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

AAAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5XYU_053 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1815

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

5XYU|1|A|A|1399
5XYU|1|A|A|1400
5XYU|1|A|A|1401
5XYU|1|A|G|1402
*
5XYU|1|A|C|1465
5XYU|1|A|G|1466
5XYU|1|A|A|1467
5XYU|1|A|U|1468

Current chains

Chain A

16S RNA

Nearby chains

Chain U

Conserved domain protein